doc/last-dotplot.txt
changeset 845 16060c00b129
parent 840 85a72978fb7d
child 846 1f46ab956351
     1.1 --- a/doc/last-dotplot.txt	Thu Mar 02 11:31:57 2017 +0900
     1.2 +++ b/doc/last-dotplot.txt	Tue Apr 04 11:51:15 2017 +0900
     1.3 @@ -79,6 +79,15 @@
     1.4        Trim unaligned sequence flanks from the 1st genome.
     1.5    --trim2
     1.6        Trim unaligned sequence flanks from the 2nd genome.
     1.7 +  --bed1=FILE
     1.8 +      Read `BED-format
     1.9 +      <https://genome.ucsc.edu/FAQ/FAQformat.html#format1>`_
    1.10 +      annotations for the 1st genome.  They are drawn as rectangles,
    1.11 +      with coordinates given by the first three BED fields.  The color
    1.12 +      is specified by the RGB field if present, else pale red if the
    1.13 +      strand is "+", pale blue if "-", or pale purple.
    1.14 +  --bed2=FILE
    1.15 +      Read BED-format annotations for the 2nd genome.
    1.16  
    1.17  Unsequenced gap options
    1.18  ~~~~~~~~~~~~~~~~~~~~~~~