1.1 --- a/doc/last-dotplot.txt Thu Jun 15 13:42:42 2017 +0900
1.2 +++ b/doc/last-dotplot.txt Tue Oct 03 18:25:07 2017 +0900
1.3 @@ -2,8 +2,9 @@
1.4 ============
1.5
1.6 This script makes a dotplot, a.k.a. Oxford Grid, of pair-wise sequence
1.7 -alignments in MAF or LAST tabular format. It requires the Python
1.8 -Imaging Library to be installed. It can be used like this::
1.9 +alignments in MAF or LAST tabular format. It requires the `Python
1.10 +Imaging Library <https://pillow.readthedocs.io/>`_ to be installed.
1.11 +It can be used like this::
1.12
1.13 last-dotplot my-alignments my-plot.png
1.14
1.15 @@ -13,7 +14,11 @@
1.16
1.17 To get a nicer font, try something like::
1.18
1.19 - last-dotplot -f /usr/share/fonts/truetype/freefont/FreeSans.ttf alns alns.png
1.20 + last-dotplot -f /usr/share/fonts/liberation/LiberationSans-Regular.ttf alns alns.png
1.21 +
1.22 +or::
1.23 +
1.24 + last-dotplot -f /Library/Fonts/Arial.ttf alns alns.png
1.25
1.26 If the fonts are located somewhere different on your computer, change
1.27 this as appropriate.
1.28 @@ -95,6 +100,10 @@
1.29 TrueType or OpenType font file.
1.30 -s SIZE, --fontsize=SIZE
1.31 TrueType or OpenType font size.
1.32 + --rot1=ROT
1.33 + Text rotation for the 1st genome: h(orizontal) or v(ertical).
1.34 + --rot2=ROT
1.35 + Text rotation for the 2nd genome: h(orizontal) or v(ertical).
1.36 --lengths1
1.37 Show sequence lengths for the 1st (horizontal) genome.
1.38 --lengths2