scripts/last-dotplot
changeset 984 fb43f850eba2
parent 981 0e184d90d5da
child 1062 6d8d56a74b14
     1.1 --- a/scripts/last-dotplot	Fri Jun 21 10:21:32 2019 +0900
     1.2 +++ b/scripts/last-dotplot	Wed Aug 21 14:32:10 2019 +0900
     1.3 @@ -647,10 +647,10 @@
     1.4              beg = int(fields[5]) - 1
     1.5              end = int(fields[6])
     1.6              strand = fields[8]
     1.7 -            repeatClass = fields[10]
     1.8 +            repeatClass = fields[10].split("/")[0]
     1.9          else:
    1.10              continue
    1.11 -        if repeatClass in ("Low_complexity", "Simple_repeat"):
    1.12 +        if repeatClass in ("Low_complexity", "Simple_repeat", "Satellite"):
    1.13              yield 200, "#fbf", seqName, beg, end
    1.14          elif (strand == "+") != rangeDict[seqName][0][2]:
    1.15              yield 100, "#ffe8e8", seqName, beg, end