# HG changeset patch # User Martin C. Frith # Date 1488267302 -32400 # Node ID 1514199bb31b352bf282c08f984567ff5ff365f9 # Parent ec636cb2fe64ee87d03ccd5d348b2d34d558e35e Bugfix: dotplot left border misplaced (for some versions of python/PIL). diff -r ec636cb2fe64 -r 1514199bb31b doc/last-papers.txt --- a/doc/last-papers.txt Fri Feb 03 19:21:38 2017 +0900 +++ b/doc/last-papers.txt Tue Feb 28 16:35:02 2017 +0900 @@ -100,6 +100,14 @@ Describes the split alignment algorithm, and its application to whole genome alignment. +12. `Training alignment parameters for arbitrary sequencers with + LAST-TRAIN`__. Hamada M, Ono Y, Asai K Frith MC. + Bioinformatics. + + __ https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btw742 + + Describes last-train. + External methods ---------------- diff -r ec636cb2fe64 -r 1514199bb31b scripts/last-dotplot --- a/scripts/last-dotplot Fri Feb 03 19:21:38 2017 +0900 +++ b/scripts/last-dotplot Tue Feb 28 16:35:02 2017 +0900 @@ -350,7 +350,7 @@ font, image_mode, opts) axis2 = get_axis_image(seq_names2, name_sizes2, seq_starts2, seq_pix2, font, image_mode, opts) - axis2 = axis2.rotate(270, expand=1) + axis2 = axis2.transpose(Image.ROTATE_270) # !!! bug hotspot im.paste(axis1, (0, 0)) im.paste(axis2, (0, 0))