Tiny doc/help edits.
authorMartin C. Frith
Fri Feb 03 19:21:38 2017 +0900 (2017-02-03)
changeset 833ec636cb2fe64
parent 832 ff7752714cef
child 834 1514199bb31b
Tiny doc/help edits.
doc/lastdb.txt
src/LastdbArguments.cc
     1.1 --- a/doc/lastdb.txt	Fri Feb 03 18:25:30 2017 +0900
     1.2 +++ b/doc/lastdb.txt	Fri Feb 03 19:21:38 2017 +0900
     1.3 @@ -59,7 +59,7 @@
     1.4    -c  Soft-mask lowercase letters.  This means that, when we compare
     1.5        these sequences to some other sequences using lastal, lowercase
     1.6        letters will be excluded from initial matches.  This will apply
     1.7 -      to lowercase letters in both sets of sequences.
     1.8 +      to lowercase letters in *both* sets of sequences.
     1.9  
    1.10    -u NAME
    1.11        Specify a seeding scheme.  The -m option will then be ignored.
     2.1 --- a/src/LastdbArguments.cc	Fri Feb 03 18:25:30 2017 +0900
     2.2 +++ b/src/LastdbArguments.cc	Fri Feb 03 19:21:38 2017 +0900
     2.3 @@ -56,7 +56,7 @@
     2.4  -p: interpret the sequences as proteins\n\
     2.5  -R: repeat-marking options (default="
     2.6      + stringify(isKeepLowercase) + stringify(tantanSetting) + ")\n\
     2.7 --c: soft-mask lowercase letters\n\
     2.8 +-c: soft-mask lowercase letters (in reference *and* query sequences)\n\
     2.9  -u: seeding scheme (default: YASS for DNA, else exact-match seeds)";
    2.10  
    2.11    std::string help = usage + "\n\