4 weeks ago Martin C. Frith dotplot: change satellite-repeat color to purple default tip
2 months ago Martin C. Frith Change last-split -m default to 1
2 months ago Martin C. Frith Fix rare last-split spliced alignment crash
3 months ago Martin C. Frith dotplot: change the undocumented input format
5 months ago Martin C. Frith Add last-dotplot --join option
5 months ago Martin C. Frith Make lastal startup even faster
5 months ago Martin C. Frith Make lastal startup faster
5 months ago Martin C. Frith Simplify some probability calculations a bit
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Add piecewise linear gap costs (unfinished)
5 months ago Martin C. Frith Add lastal/last-train -X option for ambiguous N/X
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Change the effect of setting lastal option -t
6 months ago Martin C. Frith Fix fastq-aware last-train (lastal -j7)
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Make lastal code more robust for non-DNA
7 months ago Martin C. Frith Refactor (prepare new score-matrix analysis)
7 months ago Martin C. Frith Refactor
7 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Make tantan repeat-finding faster
9 months ago Martin C. Frith Update the documents a bit
9 months ago Martin C. Frith Add last-dotplot --maxseqs option
9 months ago Martin C. Frith Make last-split -n keep E-values
10 months ago Martin C. Frith Add fastq-ignore option
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Fix gz reading for Python3
12 months ago Martin C. Frith Python3-ify last-map-probs
12 months ago Martin C. Frith Make pair-probs almost work for ref rev strands
12 months ago Martin C. Frith postmask: fix asymmetric matrix & ref rev strand
12 months ago Martin C. Frith Improve the documentation
12 months ago Martin C. Frith fastq-interleave: add /1 & /2 to identical names
12 months ago Martin C. Frith last-train: train substitutions from fastq!
13 months ago Martin C. Frith Fix lastal -j7 quality-aware expected counts
13 months ago Martin C. Frith Read fastq faster
13 months ago Martin C. Frith lastal -j7: quality-aware expected counts
13 months ago Martin C. Frith Refactor
13 months ago Martin C. Frith Add last-split --format option
14 months ago Martin C. Frith postmask: fix bug for spliced alignments
14 months ago Martin C. Frith Python3-ify maf-join
14 months ago Martin C. Frith Fix crash for bad score matrix
15 months ago Martin C. Frith Make last-dotplot really work with Python3
16 months ago Martin C. Frith Python3-ify: dotplot, train, convert, swap
16 months ago Martin C. Frith Purely cosmetic change to last-train output
16 months ago Martin C. Frith Fix postmask header bug introduced in v938
16 months ago Martin C. Frith postmask: fix bug for unusual alignment headers
16 months ago Martin C. Frith Make last-train find LAST programs more robustly
16 months ago Martin C. Frith Modernize the Python code
16 months ago Martin C. Frith Change lastal -x & -z options
16 months ago Martin C. Frith Make last-train use last-postmask
16 months ago Martin C. Frith postmask: bugfix for strand-asymmetric scores
17 months ago Martin C. Frith Add maf-cut utility
17 months ago Martin C. Frith Use appropriate scores for ambiguous DNA letters
17 months ago Martin C. Frith Prettify the score matrix in lastal's header
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Refactor
18 months ago Martin C. Frith Fix dotplot --strands bug with cut sequences
18 months ago Martin C. Frith Fix dotplot crash for sorting by sequence length