3 weeks ago Martin C. Frith Make tantan repeat-finding faster default tip
2 months ago Martin C. Frith Reduce last-split memory & time usage a bit
2 months ago Martin C. Frith Make last-split a bit faster
2 months ago Martin C. Frith Make last-split a bit faster
2 months ago Martin C. Frith Refactor
2 months ago Martin C. Frith Make last-split much faster
2 months ago Martin C. Frith Refactor
2 months ago Martin C. Frith Make last-split a bit faster
2 months ago Martin C. Frith Try to make last-split faster
2 months ago Martin C. Frith Make last-split a bit faster
2 months ago Martin C. Frith Tiny change to last-split probabilities
2 months ago Martin C. Frith Refactor
2 months ago Martin C. Frith Refactor
2 months ago Martin C. Frith Refactor (rename a variable)
4 months ago Martin C. Frith last-postmask: fix crash on length-1 DB name
4 months ago Martin C. Frith last-train: fix occasional crashes since v1020
5 months ago Martin C. Frith Make it usable without SSE/SIMD
5 months ago Martin C. Frith Maybe make lastal gapped alignment a bit faster
5 months ago Martin C. Frith Maybe make lastal gapped alignment a bit faster
5 months ago Martin C. Frith Make lastal DNA gapped alignment faster
5 months ago Martin C. Frith Make lastal DNA gapped alignment faster
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Make lastal DNA gapped alignment faster
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Change lastal probabilities slightly
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor & robustify the code
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Robustify compilation
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Fix compile error (thanks: V Brendel & D Eccles)
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Refactor
5 months ago Martin C. Frith Change lastal probabilities slightly
6 months ago Martin C. Frith train: double scale if integer-rounding is bad
6 months ago Martin C. Frith !Make last-train use balanced length probability
6 months ago Martin C. Frith train: change integer-rounding of gap open costs
6 months ago Martin C. Frith !Change lastal default gapless score threshold
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Remove always-zero counts from lastal -j7
6 months ago Martin C. Frith Re-order some probability calculations
6 months ago Martin C. Frith !Get lastal probabilities from "model A"
6 months ago Martin C. Frith Re-order probability calculations
6 months ago Martin C. Frith Refactor (better variable names)
6 months ago Martin C. Frith Remove probabilities for generalized affine gaps
6 months ago Martin C. Frith Make fastq gapped alignment faster (SIMD)!
6 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Refactor