7 months ago Martin C. Frith Small doc update default tip
7 months ago Martin C. Frith Big doc update
7 months ago Martin C. Frith train --codon: more data & better pseudocounts
8 months ago Martin C. Frith Better repeat-masking for new-style frameshifts
8 months ago Martin C. Frith Refactor
8 months ago Martin C. Frith Refactor
8 months ago Martin C. Frith Refactor
8 months ago Martin C. Frith last-train: add codon & frameshift options!
8 months ago Martin C. Frith Refactor
8 months ago Martin C. Frith Fix E-values for new-style frameshifts
8 months ago Martin C. Frith Try to fix floating-point infinite loops
9 months ago Martin C. Frith New frameshifts: fix print precision of score
9 months ago Martin C. Frith Better rep-masking for codons & new frameshifts
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Add last-train --scale option
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Change expected-count output for new frameshifts
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Add lastdb -q option
9 months ago Martin C. Frith Protein-codon alignment: use tantan on the DNA
9 months ago Martin C. Frith E-values for new-style frameshifts!
9 months ago Martin C. Frith Start implementing frameshift E-value simulation
9 months ago Martin C. Frith Allow for non-integer alignment scores
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Protein-codon alignment: fix writing X and *
9 months ago Martin C. Frith Reduce lastal memory use, sometimes
9 months ago Martin C. Frith Fix minor bugs in E-value finite-size correction
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Refactor
9 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Try to appease C++ compilers
10 months ago Martin C. Frith Add awk mismap trick to doc
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Add probabilities for new-style frameshifts
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Fix protein-codon alignment probabilities
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Refactor
11 months ago Martin C. Frith last-dotplot: fix crash on long annotation names
11 months ago Martin C. Frith last-dotplot: fix crash on annotation names
11 months ago Martin C. Frith Add new-style frameshifts (undocumented)
11 months ago Martin C. Frith Fix E-values for protein-codon alignment
11 months ago Martin C. Frith Start adding new-style frameshifts
11 months ago Martin C. Frith Refactor
11 months ago Martin C. Frith Add protein-codon alignment (undocumented)!
11 months ago Martin C. Frith Almost add protein-codon alignment
11 months ago Martin C. Frith A bit more protein-codon alignment
11 months ago Martin C. Frith Further implement protein-codon alignment
11 months ago Martin C. Frith Continue to implement protein-codon alignment
11 months ago Martin C. Frith Even more protein-codon alignment...
11 months ago Martin C. Frith Yet more protein-codon alignment...
11 months ago Martin C. Frith Further implement protein-codon alignment