4 days ago Martin C. Frith dotplot: change the undocumented input format default tip
2 months ago Martin C. Frith Add last-dotplot --join option
2 months ago Martin C. Frith Make lastal startup even faster
2 months ago Martin C. Frith Make lastal startup faster
2 months ago Martin C. Frith Simplify some probability calculations a bit
2 months ago Martin C. Frith Refactor
2 months ago Martin C. Frith Add piecewise linear gap costs (unfinished)
2 months ago Martin C. Frith Add lastal/last-train -X option for ambiguous N/X
3 months ago Martin C. Frith Refactor
3 months ago Martin C. Frith Refactor
3 months ago Martin C. Frith Refactor
3 months ago Martin C. Frith Change the effect of setting lastal option -t
3 months ago Martin C. Frith Fix fastq-aware last-train (lastal -j7)
3 months ago Martin C. Frith Refactor
3 months ago Martin C. Frith Make lastal code more robust for non-DNA
3 months ago Martin C. Frith Refactor (prepare new score-matrix analysis)
3 months ago Martin C. Frith Refactor
3 months ago Martin C. Frith Refactor
6 months ago Martin C. Frith Make tantan repeat-finding faster
6 months ago Martin C. Frith Update the documents a bit
6 months ago Martin C. Frith Add last-dotplot --maxseqs option
6 months ago Martin C. Frith Make last-split -n keep E-values
7 months ago Martin C. Frith Add fastq-ignore option
7 months ago Martin C. Frith Refactor
7 months ago Martin C. Frith Fix gz reading for Python3
9 months ago Martin C. Frith Python3-ify last-map-probs
9 months ago Martin C. Frith Make pair-probs almost work for ref rev strands
9 months ago Martin C. Frith postmask: fix asymmetric matrix & ref rev strand
9 months ago Martin C. Frith Improve the documentation
9 months ago Martin C. Frith fastq-interleave: add /1 & /2 to identical names
9 months ago Martin C. Frith last-train: train substitutions from fastq!
10 months ago Martin C. Frith Fix lastal -j7 quality-aware expected counts
10 months ago Martin C. Frith Read fastq faster
10 months ago Martin C. Frith lastal -j7: quality-aware expected counts
10 months ago Martin C. Frith Refactor
10 months ago Martin C. Frith Add last-split --format option
10 months ago Martin C. Frith postmask: fix bug for spliced alignments
11 months ago Martin C. Frith Python3-ify maf-join
11 months ago Martin C. Frith Fix crash for bad score matrix
12 months ago Martin C. Frith Make last-dotplot really work with Python3
13 months ago Martin C. Frith Python3-ify: dotplot, train, convert, swap
13 months ago Martin C. Frith Purely cosmetic change to last-train output
13 months ago Martin C. Frith Fix postmask header bug introduced in v938
13 months ago Martin C. Frith postmask: fix bug for unusual alignment headers
13 months ago Martin C. Frith Make last-train find LAST programs more robustly
13 months ago Martin C. Frith Modernize the Python code
13 months ago Martin C. Frith Change lastal -x & -z options
13 months ago Martin C. Frith Make last-train use last-postmask
13 months ago Martin C. Frith postmask: bugfix for strand-asymmetric scores
14 months ago Martin C. Frith Add maf-cut utility
14 months ago Martin C. Frith Use appropriate scores for ambiguous DNA letters
14 months ago Martin C. Frith Prettify the score matrix in lastal's header
14 months ago Martin C. Frith Refactor
14 months ago Martin C. Frith Refactor
14 months ago Martin C. Frith Refactor
15 months ago Martin C. Frith Fix dotplot --strands bug with cut sequences
15 months ago Martin C. Frith Fix dotplot crash for sorting by sequence length
16 months ago Martin C. Frith Convert Us in RNA to Ts
16 months ago Martin C. Frith Multi-thread lastdb's main sort
16 months ago Martin C. Frith Fix some E-value & last-train fails