Mercuriallast / shortlog
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2015-10-19 Martin C. Frith Made last-dotplot much faster. changeset | files
2015-10-07 Martin C. Frith Made last-train handle zero counts more robustly. changeset | files
2015-10-07 Martin C. Frith Made last-train more likely to find a compatible version of LAST. changeset | files
2015-10-06 Martin C. Frith Added -s and -m options to last-train. changeset | files
2015-10-06 Martin C. Frith Small update to tuning doc. changeset | files
2015-10-05 Martin C. Frith Streamlined the tests. changeset | files
2015-10-05 Martin C. Frith Added -S option to last-train, and to docs. changeset | files
2015-10-05 Martin C. Frith Write new lastal option -S in the output header. changeset | files
2015-10-05 Martin C. Frith Added a test of new lastal option -S. changeset | files
2015-10-05 Martin C. Frith Added lastal option -S, to control non-strand-symmetric score matrices. changeset | files
2015-10-05 Martin C. Frith Trivial refactoring. changeset | files
2015-10-05 Martin C. Frith Refactoring. changeset | files
2015-10-05 Martin C. Frith Removed unused parameter from lastal output header. changeset | files
2015-10-05 Martin C. Frith Refactoring. changeset | files
2015-10-05 Martin C. Frith Refactoring. changeset | files
2015-10-05 Martin C. Frith Fixed lastal crash with all-zeros score matrix. changeset | files
2015-10-05 Martin C. Frith Refactoring. changeset | files
2015-10-05 Martin C. Frith Minor improvements to makefiles. changeset | files
2015-09-17 Martin C. Frith Made lastdb with option -C (child table) much faster. changeset | files
2015-09-17 Martin C. Frith Refactoring. changeset | files
2015-09-17 Martin C. Frith Added NEAR seeding scheme. changeset | files
2015-09-15 Martin C. Frith Edited the seed & matrix docs a bit. changeset | files
2015-09-15 Martin C. Frith Enabled setting lastal defaults in lastdb seed files. changeset | files
2015-09-15 Martin C. Frith Refactoring. changeset | files
2015-09-14 Martin C. Frith Added YASS built-in seeding scheme. changeset | files
2015-09-14 Martin C. Frith Added seeding schemes doc. changeset | files
2015-09-14 Martin C. Frith Enabled setting lastdb options from seed file. changeset | files
2015-09-14 Martin C. Frith Started implementing lastdb options from seed file. changeset | files
2015-09-14 Martin C. Frith Made lastdb option -u override -m. Made empty seed patterns errors. changeset | files
2015-09-14 Martin C. Frith Use at most one lastdb seed file. changeset | files
2015-09-14 Martin C. Frith Refactoring. changeset | files
2015-09-14 Martin C. Frith ! Changed the format of subset seed files. changeset | files
2015-09-14 Martin C. Frith Refactoring. changeset | files
2015-09-14 Martin C. Frith Made the docs a bit nicer. changeset | files
2015-09-14 Martin C. Frith Better error message for bad symbol in sequence. changeset | files
2015-08-31 Martin C. Frith Added MURPHY10 subset seed. changeset | files
2015-08-31 Martin C. Frith Allow fastq DNA-vs-protein, and non-fastq query vs fastq reference. changeset | files
2015-08-31 Martin C. Frith Refactoring. changeset | files
2015-08-31 Martin C. Frith Refactoring. changeset | files
2015-08-27 Martin C. Frith Refactoring. changeset | files
2015-08-27 Martin C. Frith Removed a redundant file. changeset | files
2015-08-27 Martin C. Frith Better error messages. changeset | files
2015-08-26 Martin C. Frith Added PAM30 matrix. changeset | files
2015-08-26 Martin C. Frith Added last-matrices doc. changeset | files
2015-08-26 Martin C. Frith Tried to improve the docs. changeset | files
2015-08-25 Martin C. Frith Preserve file modification times in the zip. changeset | files
2015-08-25 Martin C. Frith Refactoring. changeset | files
2015-08-25 Martin C. Frith Fixed a spelling error (thanks: Charles Plessy). changeset | files
2015-08-25 Martin C. Frith Increased test coverage. changeset | files
2015-08-03 Martin C. Frith Doc update. changeset | files
2015-08-03 Martin C. Frith Minor code cleaning. changeset | files
2015-06-17 Martin C. Frith Bugfix: lastal expected ins/del counts not quite right with -T1. changeset | files
2015-06-12 Martin C. Frith Added last-train! changeset | files
2015-06-12 Martin C. Frith Updated to latest ALP lib: faster E-value calculations at lastal startup. changeset | files
2015-06-10 Martin C. Frith Bugfix: no E-values for some unusual score parameters since v573. changeset | files
2015-06-08 Martin C. Frith Made last-split with option --no-split keep expected counts. changeset | files
2015-06-08 Martin C. Frith Documented lastal expected counts option. changeset | files
2015-06-08 Martin C. Frith Made lastal non-redundantize gapped alignments more thoroughly. changeset | files
2015-05-26 Martin C. Frith Added child table option. changeset | files
2015-05-26 Martin C. Frith Made lastal seed-finding a bit faster, maybe. changeset | files
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