2017-10-03 Martin C. Frith Add text-rotation options to last-dotplot
2017-10-03 Martin C. Frith Fix mixed-up margin sizes in last-dotplot
2017-09-27 Martin C. Frith Try to make the gz compilation work more portably
2017-09-26 Martin C. Frith Add gz reading to: dotplot postmask train convert
2017-09-22 Martin C. Frith Make the gz stuff compile on old computers
2017-09-22 Martin C. Frith Try to make compilation more robust & portable
2017-09-22 Martin C. Frith Enable lastal, lastdb, etc to read .gz files
2017-09-22 Martin C. Frith Add option -k to last-train
2017-09-22 Martin C. Frith Add -x % option to lastal
2017-06-20 Martin C. Frith Make it easier to feed stdin/pipe to last-train
2017-06-20 Martin C. Frith Add raw score to BlastTab+ format
2017-06-15 Martin C. Frith Make last-train read sequence file "-" from stdin
2017-06-15 Martin C. Frith Change last-dotplot's verbosity
2017-06-15 Martin C. Frith Enable E-values for some unusual scoring schemes
2017-06-02 Martin C. Frith Update docs
2017-06-02 Martin C. Frith last-dotplot: get bp-per-pixel faster
2017-06-02 Martin C. Frith Fix parsing of command-line options
2017-05-18 Martin C. Frith last-dotplot: do e.g. chr7 annotations -> hg19.chr7 only if no ambiguity
2017-05-18 Martin C. Frith last-dotplot: add genePred and rmsk options
2017-05-18 Martin C. Frith last-dotplot: refactor
2017-05-18 Martin C. Frith last-dotplot: get layer from BED score
2017-05-18 Martin C. Frith last-dotplot: start implementing "layers"
2017-05-18 Martin C. Frith last-dotplot: parse BED more liberally
2017-05-17 Martin C. Frith Refactor last-dotplot
2017-05-15 Martin C. Frith Make maf-convert to tab faster
2017-05-15 Martin C. Frith Add lastal's -C option to last-train
2017-05-02 Martin C. Frith Add border options to last-dotplot
2017-05-02 Martin C. Frith Add sequence order options to last-dotplot
2017-05-02 Martin C. Frith Tweak last-dotplot's documentation
2017-04-18 Martin C. Frith Refactor
2017-04-18 Martin C. Frith Improve last-train sampling for long queries, e.g. chromosomes
2017-04-04 Martin C. Frith Made last-dotplot print width & height.
2017-04-04 Martin C. Frith Added last-dotplot options to show sequence lengths.
2017-04-04 Martin C. Frith Added last-dotplot options to show BED features.
2017-04-04 Martin C. Frith Made last-dotplot faster, sometimes.
2017-03-09 Martin C. Frith Fixed compile errors with old compilers.
2017-03-07 Martin C. Frith Added lastal -N option to quickly get the first hits per query.
2017-03-07 Martin C. Frith Bugfix: E-values were occasionally negative.
2017-03-02 Martin C. Frith Enabled sequence ranges for last-dotplot.
2017-03-02 Martin C. Frith Added trim options to last-dotplot.
2017-03-02 Martin C. Frith Refactoring.
2017-02-28 Martin C. Frith Refactoring.
2017-02-28 Martin C. Frith Refactoring.
2017-02-28 Martin C. Frith Refactoring.
2017-02-28 Martin C. Frith Bugfix: dotplot left border misplaced (for some versions of python/PIL).
2017-02-03 Martin C. Frith Tiny doc/help edits.
2017-02-03 Martin C. Frith Bugfix: rarely, last-split output end-gaps with wrong score/don/acc.
2017-02-03 Martin C. Frith Bugfix(?): made maf-convert to psl trim end-gaps.
2017-01-19 Martin C. Frith Added don and acc to spliced alignment output.
2017-01-19 Martin C. Frith Refactoring.
2016-12-19 Martin C. Frith Just re-ordered some probability calculations.
2016-12-19 Martin C. Frith Refactoring.
2016-12-19 Martin C. Frith Made lastal's probabilistic alignment faster.
2016-12-19 Martin C. Frith Refactoring.
2016-12-19 Martin C. Frith Refactoring.
2016-12-19 Martin C. Frith Refactoring.
2016-12-16 Martin C. Frith Made lastal's probabilistic alignment faster, for FASTA queries.
2016-12-16 Martin C. Frith Made lastal with asymmetric gap costs faster (but symmetric gap costs slower?)
2016-12-16 Martin C. Frith Sped up fasta-reading, added tests.
2016-12-13 Martin C. Frith Bugfix: the previous update put junk in the zip-file.