11 months ago Martin C. Frith dotplot: change satellite-repeat color to purple
13 months ago Martin C. Frith Change last-split -m default to 1
13 months ago Martin C. Frith Fix rare last-split spliced alignment crash
13 months ago Martin C. Frith dotplot: change the undocumented input format
15 months ago Martin C. Frith Add last-dotplot --join option
16 months ago Martin C. Frith Make lastal startup even faster
16 months ago Martin C. Frith Make lastal startup faster
16 months ago Martin C. Frith Simplify some probability calculations a bit
16 months ago Martin C. Frith Refactor
16 months ago Martin C. Frith Add piecewise linear gap costs (unfinished)
16 months ago Martin C. Frith Add lastal/last-train -X option for ambiguous N/X
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Change the effect of setting lastal option -t
17 months ago Martin C. Frith Fix fastq-aware last-train (lastal -j7)
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Make lastal code more robust for non-DNA
17 months ago Martin C. Frith Refactor (prepare new score-matrix analysis)
17 months ago Martin C. Frith Refactor
17 months ago Martin C. Frith Refactor
19 months ago Martin C. Frith Make tantan repeat-finding faster
19 months ago Martin C. Frith Update the documents a bit
20 months ago Martin C. Frith Add last-dotplot --maxseqs option
20 months ago Martin C. Frith Make last-split -n keep E-values
21 months ago Martin C. Frith Add fastq-ignore option
21 months ago Martin C. Frith Refactor
21 months ago Martin C. Frith Fix gz reading for Python3
23 months ago Martin C. Frith Python3-ify last-map-probs
23 months ago Martin C. Frith Make pair-probs almost work for ref rev strands
23 months ago Martin C. Frith postmask: fix asymmetric matrix & ref rev strand
23 months ago Martin C. Frith Improve the documentation
23 months ago Martin C. Frith fastq-interleave: add /1 & /2 to identical names
23 months ago Martin C. Frith last-train: train substitutions from fastq!
23 months ago Martin C. Frith Fix lastal -j7 quality-aware expected counts
23 months ago Martin C. Frith Read fastq faster
24 months ago Martin C. Frith lastal -j7: quality-aware expected counts
24 months ago Martin C. Frith Refactor
2018-08-01 Martin C. Frith Add last-split --format option
2018-07-30 Martin C. Frith postmask: fix bug for spliced alignments
2018-07-17 Martin C. Frith Python3-ify maf-join
2018-07-17 Martin C. Frith Fix crash for bad score matrix
2018-06-25 Martin C. Frith Make last-dotplot really work with Python3
2018-05-28 Martin C. Frith Python3-ify: dotplot, train, convert, swap
2018-05-28 Martin C. Frith Purely cosmetic change to last-train output
2018-05-28 Martin C. Frith Fix postmask header bug introduced in v938
2018-05-14 Martin C. Frith postmask: fix bug for unusual alignment headers
2018-05-14 Martin C. Frith Make last-train find LAST programs more robustly
2018-05-07 Martin C. Frith Modernize the Python code
2018-05-07 Martin C. Frith Change lastal -x & -z options
2018-05-07 Martin C. Frith Make last-train use last-postmask
2018-05-07 Martin C. Frith postmask: bugfix for strand-asymmetric scores
2018-04-20 Martin C. Frith Add maf-cut utility
2018-04-18 Martin C. Frith Use appropriate scores for ambiguous DNA letters
2018-04-17 Martin C. Frith Prettify the score matrix in lastal's header
2018-04-17 Martin C. Frith Refactor
2018-04-17 Martin C. Frith Refactor
2018-04-16 Martin C. Frith Refactor
2018-03-05 Martin C. Frith Fix dotplot --strands bug with cut sequences
2018-03-05 Martin C. Frith Fix dotplot crash for sorting by sequence length