14 months ago Martin C. Frith dotplot: change satellite-repeat color to purple
15 months ago Martin C. Frith Change last-split -m default to 1
16 months ago Martin C. Frith Fix rare last-split spliced alignment crash
16 months ago Martin C. Frith dotplot: change the undocumented input format
18 months ago Martin C. Frith Add last-dotplot --join option
19 months ago Martin C. Frith Make lastal startup even faster
19 months ago Martin C. Frith Make lastal startup faster
19 months ago Martin C. Frith Simplify some probability calculations a bit
19 months ago Martin C. Frith Refactor
19 months ago Martin C. Frith Add piecewise linear gap costs (unfinished)
19 months ago Martin C. Frith Add lastal/last-train -X option for ambiguous N/X
20 months ago Martin C. Frith Refactor
20 months ago Martin C. Frith Refactor
20 months ago Martin C. Frith Refactor
20 months ago Martin C. Frith Change the effect of setting lastal option -t
20 months ago Martin C. Frith Fix fastq-aware last-train (lastal -j7)
20 months ago Martin C. Frith Refactor
20 months ago Martin C. Frith Make lastal code more robust for non-DNA
20 months ago Martin C. Frith Refactor (prepare new score-matrix analysis)
20 months ago Martin C. Frith Refactor
20 months ago Martin C. Frith Refactor
22 months ago Martin C. Frith Make tantan repeat-finding faster
22 months ago Martin C. Frith Update the documents a bit
22 months ago Martin C. Frith Add last-dotplot --maxseqs option
22 months ago Martin C. Frith Make last-split -n keep E-values
24 months ago Martin C. Frith Add fastq-ignore option
24 months ago Martin C. Frith Refactor
24 months ago Martin C. Frith Fix gz reading for Python3
2018-09-10 Martin C. Frith Python3-ify last-map-probs
2018-09-07 Martin C. Frith Make pair-probs almost work for ref rev strands
2018-09-07 Martin C. Frith postmask: fix asymmetric matrix & ref rev strand
2018-09-05 Martin C. Frith Improve the documentation
2018-09-05 Martin C. Frith fastq-interleave: add /1 & /2 to identical names
2018-09-05 Martin C. Frith last-train: train substitutions from fastq!
2018-08-29 Martin C. Frith Fix lastal -j7 quality-aware expected counts
2018-08-24 Martin C. Frith Read fastq faster
2018-08-21 Martin C. Frith lastal -j7: quality-aware expected counts
2018-08-20 Martin C. Frith Refactor
2018-08-01 Martin C. Frith Add last-split --format option
2018-07-30 Martin C. Frith postmask: fix bug for spliced alignments
2018-07-17 Martin C. Frith Python3-ify maf-join
2018-07-17 Martin C. Frith Fix crash for bad score matrix
2018-06-25 Martin C. Frith Make last-dotplot really work with Python3
2018-05-28 Martin C. Frith Python3-ify: dotplot, train, convert, swap
2018-05-28 Martin C. Frith Purely cosmetic change to last-train output
2018-05-28 Martin C. Frith Fix postmask header bug introduced in v938
2018-05-14 Martin C. Frith postmask: fix bug for unusual alignment headers
2018-05-14 Martin C. Frith Make last-train find LAST programs more robustly
2018-05-07 Martin C. Frith Modernize the Python code
2018-05-07 Martin C. Frith Change lastal -x & -z options
2018-05-07 Martin C. Frith Make last-train use last-postmask
2018-05-07 Martin C. Frith postmask: bugfix for strand-asymmetric scores
2018-04-20 Martin C. Frith Add maf-cut utility
2018-04-18 Martin C. Frith Use appropriate scores for ambiguous DNA letters
2018-04-17 Martin C. Frith Prettify the score matrix in lastal's header
2018-04-17 Martin C. Frith Refactor
2018-04-17 Martin C. Frith Refactor
2018-04-16 Martin C. Frith Refactor
2018-03-05 Martin C. Frith Fix dotplot --strands bug with cut sequences
2018-03-05 Martin C. Frith Fix dotplot crash for sorting by sequence length