Changeset 245

Timestamp:

07/09/12 15:02:17 (11 months ago)

Author:

martin

Message:

Made last-map-probs a tiny bit faster, maybe.

Files:

• scripts/last-map-probs.py (modified) (1 diff)

scripts/last-map-probs.py

@@ -32 +32 @@
         elif line[0] == "s":
             sLineCount += 1
-            if sLineCount == 2: queryNames.append(line.split()[1])
-            # maxsplit doesn't seem to make it faster
+            if sLineCount == 2: queryNames.append(line.split(None, 2)[1])
         elif line[0].isdigit():  # we have an alignment in tabular format
-            w = line.split()
+            w = line.split(None, 7)
             scores.append(float(w[0]))
             queryNames.append(w[6])